ppALIGN Result

Parameters

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PpAlign_Program

ppalign

PpAlign_Version

1.0

Algorithm

Global

Alphabet

protein

Scorematrix

blosum62

Gap_Open

Gap_Extension

Transition Matrix

	P	A	B
S	0.999981	9.71981e-06	9.71987e-06
P	0.999981	9.71981e-06	9.71987e-06
A	0.632121	0.367879	0
B	0.632117	3.88393e-06	0.367879

Pair Matrix

	A	R	N	D	C	Q	E	G	H	I	L	K	M	F	P	S	T	W	Y	V
A	0.021528	0.00230299	0.00190247	0.00220286	0.00160208	0.00190247	0.00300391	0.00580755	0.00110143	0.00320417	0.00440573	0.0033043	0.00130169	0.00160208	0.00220286	0.0063082	0.00370482	0.000400521	0.00130169	0.00510664
R	0.00230299	0.0178232	0.0020026	0.00160208	0.000400521	0.00250325	0.00270351	0.00170221	0.00120156	0.00120156	0.00240312	0.00620807	0.000801041	0.000901172	0.0010013	0.00230299	0.00180234	0.000300391	0.000901172	0.00160208
N	0.00190247	0.0020026	0.0141184	0.00370482	0.000400521	0.00150195	0.00220286	0.00290377	0.00140182	0.0010013	0.00140182	0.00240312	0.000500651	0.000801041	0.000901172	0.00310404	0.00220286	0.00020026	0.000700911	0.00120156
D	0.00220286	0.00160208	0.00370482	0.0213277	0.000400521	0.00160208	0.00490638	0.00250325	0.0010013	0.00120156	0.00150195	0.00240312	0.000500651	0.000801041	0.00120156	0.00280364	0.00190247	0.00020026	0.000600781	0.00130169
C	0.00160208	0.000400521	0.000400521	0.000400521	0.0119155	0.000300391	0.000400521	0.000801041	0.00020026	0.00110143	0.00160208	0.000500651	0.000400521	0.000500651	0.000400521	0.0010013	0.000901172	0.00010013	0.000300391	0.00140182
Q	0.00190247	0.00250325	0.00150195	0.00160208	0.000300391	0.0073095	0.00350456	0.00140182	0.0010013	0.000901172	0.00160208	0.00310404	0.000700911	0.000500651	0.000801041	0.00190247	0.00140182	0.00020026	0.000700911	0.00120156
E	0.00300391	0.00270351	0.00220286	0.00490638	0.000400521	0.00350456	0.016121	0.00190247	0.00140182	0.00120156	0.0020026	0.00410534	0.000700911	0.000901172	0.00140182	0.00300391	0.0020026	0.000300391	0.000901172	0.00170221
G	0.00580755	0.00170221	0.00290377	0.00250325	0.000801041	0.00140182	0.00190247	0.0378492	0.0010013	0.00140182	0.00210273	0.00250325	0.000700911	0.00120156	0.00140182	0.00380495	0.00220286	0.000400521	0.000801041	0.00180234
H	0.00110143	0.00120156	0.00140182	0.0010013	0.00020026	0.0010013	0.00140182	0.0010013	0.00931211	0.000600781	0.0010013	0.00120156	0.000400521	0.000801041	0.000500651	0.00110143	0.000700911	0.00020026	0.00150195	0.000600781
I	0.00320417	0.00120156	0.0010013	0.00120156	0.00110143	0.000901172	0.00120156	0.00140182	0.000600781	0.018424	0.0114148	0.00160208	0.00250325	0.00300391	0.0010013	0.00170221	0.00270351	0.000400521	0.00140182	0.0120156
L	0.00440573	0.00240312	0.00140182	0.00150195	0.00160208	0.00160208	0.0020026	0.00210273	0.0010013	0.0114148	0.0371483	0.00250325	0.00490638	0.00540703	0.00140182	0.00240312	0.0033043	0.000700911	0.00220286	0.00951237
K	0.0033043	0.00620807	0.00240312	0.00240312	0.000500651	0.00310404	0.00410534	0.00250325	0.00120156	0.00160208	0.00250325	0.016121	0.000901172	0.000901172	0.00160208	0.00310404	0.00230299	0.000300391	0.0010013	0.00190247
M	0.00130169	0.000801041	0.000500651	0.000500651	0.000400521	0.000700911	0.000700911	0.000700911	0.000400521	0.00250325	0.00490638	0.000901172	0.00400521	0.00120156	0.000400521	0.000901172	0.0010013	0.00020026	0.000600781	0.00230299
F	0.00160208	0.000901172	0.000801041	0.000801041	0.000500651	0.000500651	0.000901172	0.00120156	0.000801041	0.00300391	0.00540703	0.000901172	0.00120156	0.0183238	0.000500651	0.00120156	0.00120156	0.000801041	0.00420547	0.00260338
P	0.00220286	0.0010013	0.000901172	0.00120156	0.000400521	0.000801041	0.00140182	0.00140182	0.000500651	0.0010013	0.00140182	0.00160208	0.000400521	0.000500651	0.0191249	0.00170221	0.00140182	0.00010013	0.000500651	0.00120156
S	0.0063082	0.00230299	0.00310404	0.00280364	0.0010013	0.00190247	0.00300391	0.00380495	0.00110143	0.00170221	0.00240312	0.00310404	0.000901172	0.00120156	0.00170221	0.0126164	0.00470612	0.000300391	0.0010013	0.00240312
T	0.00370482	0.00180234	0.00220286	0.00190247	0.000901172	0.00140182	0.0020026	0.00220286	0.000700911	0.00270351	0.0033043	0.00230299	0.0010013	0.00120156	0.00140182	0.00470612	0.0125163	0.000300391	0.000901172	0.00360469
W	0.000400521	0.000300391	0.00020026	0.00020026	0.00010013	0.00020026	0.000300391	0.000400521	0.00020026	0.000400521	0.000700911	0.000300391	0.00020026	0.000801041	0.00010013	0.000300391	0.000300391	0.00650846	0.000901172	0.000400521
Y	0.00130169	0.000901172	0.000700911	0.000600781	0.000300391	0.000700911	0.000901172	0.000801041	0.00150195	0.00140182	0.00220286	0.0010013	0.000600781	0.00420547	0.000500651	0.0010013	0.000901172	0.000901172	0.0102133	0.00150195
V	0.00510664	0.00160208	0.00120156	0.00130169	0.00140182	0.00120156	0.00170221	0.00180234	0.000600781	0.0120156	0.00951237	0.00190247	0.00230299	0.00260338	0.00120156	0.00240312	0.00360469	0.000400521	0.00150195	0.0196255

Background

A	R	N	D	C	Q	E	G	H	I	L	K	M	F	P	S	T	W	Y	V
0.0778443	0.0508982	0.0409182	0.0518962	0.0239521	0.0339321	0.0588822	0.0828343	0.0249501	0.0618762	0.0918164	0.0558882	0.0239521	0.0439122	0.0429142	0.0588822	0.0548902	0.0139721	0.0339321	0.0718563

Alignment

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QueryDef	Query Sequence
SubjectDef	Subject Sequence
Align-len	77	Identity	20	Gaps	27
Score	38	AvgPosterProb	0.516278	MaxAvgPosterProb	0.795801

	Regions common to all alignments (your provided one and alternative alignments)
	Regions not common to all alignments. Click on those regions to display possible alternatives
	maximum marginalized averaged posterior
	Sampled from the posterior distribution.

ppALIGN• 1.0

posterior probabilities for
score based sequence alignments

ppALIGN Result

Parameters

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Alignment

[Show Details]

ppALIGN• 1.0

posterior probabilities forscore based sequence alignments

ppALIGN Result

Parameters

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Alignment

[Show Details]

posterior probabilities for
score based sequence alignments