ppBLAST Result

BLAST Parameters

[Show]

BLAST program	blastn BLASTN 2.2.22+
Reference	Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14.
Database	dbindex/10090/allcontig_and_rna
Match	1
Mismatch	-2
Gap Open	2
Gap Extend	1
Query ID	0
Query Length	73308
Query Def	Human
Expect	10
Filter	F

Parameters

[Show]

PpAlign_Program	ppblast
PpAlign_Version	1.0
Algorithm	GlobalBounded
Input	nblast.xml
Match	1
Mismatch	-2
Gap_Open	2
Gap_Extension	1

	Regions common to all alignments (your provided one and alternative alignments)
	Regions not common to all alignments. Click on those regions to display possible alternatives
	maximum marginalized averaged posterior
	Sampled from the posterior distribution.

Results

Hit

HSP

Def

Score

Evalue

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

204

1.35937e-101

Align-len	667	AvgPosterProb	0.810875	ExpectedScore	130.193
Gaps	38	Identity	520	MaxAvgPosterProb	0.838481
Score	220

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

198

3.31768e-98

Align-len	645	AvgPosterProb	0.8361689393	ExpectedScore	139.8590269691
Gaps	49	Identity	506	MaxAvgPosterProb	0.8568727204
Score	217

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

155

6.27907e-74

Align-len	489	AvgPosterProb	0.8326406852	ExpectedScore	106.1001643429
Gaps	30	Identity	383	MaxAvgPosterProb	0.8467862580
Score	169

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

148

5.62309e-70

Align-len	510	AvgPosterProb	0.8245997680	ExpectedScore	94.5319142402
Gaps	33	Identity	395	MaxAvgPosterProb	0.8424410874
Score	164

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

120

3.61655e-54

Align-len	233	AvgPosterProb	0.9103871319	ExpectedScore	100.3990155453
Gaps	2	Identity	196	MaxAvgPosterProb	0.9244329086
Score	120

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

120

3.61655e-54

Align-len	233	AvgPosterProb	0.9103871319	ExpectedScore	100.3990155453
Gaps	2	Identity	196	MaxAvgPosterProb	0.9244329086
Score	120

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

120

3.61655e-54

Align-len	233	AvgPosterProb	0.9103871319	ExpectedScore	100.3990155453
Gaps	2	Identity	196	MaxAvgPosterProb	0.9244329086
Score	120

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

120

3.61655e-54

Align-len	233	AvgPosterProb	0.9103871319	ExpectedScore	100.3990155453
Gaps	2	Identity	196	MaxAvgPosterProb	0.9244329086
Score	120

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

3.49703e-41

Align-len	232	AvgPosterProb	0.8714135867	ExpectedScore	65.7820033288
Gaps	0	Identity	187	MaxAvgPosterProb	0.8860665551
Score	97

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

3.49703e-41

Align-len	232	AvgPosterProb	0.8714135867	ExpectedScore	65.7820033288
Gaps	0	Identity	187	MaxAvgPosterProb	0.8860665551
Score	97

gi|149257821|
ref|NT_039433.7|
Mm7_39473_37

Mus musculus chromosome 7 genomic contig, strain C57BL/6J

2.01418e-21

Align-len	169	AvgPosterProb	0.8180981133	ExpectedScore	38.4467987789
Gaps	2	Identity	134	MaxAvgPosterProb	0.8449331210
Score	62

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

196

4.46683e-97

Align-len	645	AvgPosterProb	0.8270137914	ExpectedScore	132.7353814998
Gaps	46	Identity	505	MaxAvgPosterProb	0.8501948279
Score	213

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

195

1.63901e-96

Align-len	667	AvgPosterProb	0.7941605906	ExpectedScore	118.8566215274
Gaps	38	Identity	517	MaxAvgPosterProb	0.8307543366
Score	211

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

154

2.30398e-73

Align-len	490	AvgPosterProb	0.8346591785	ExpectedScore	105.0315174485
Gaps	32	Identity	384	MaxAvgPosterProb	0.8492140897
Score	168

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

150

4.17647e-71

Align-len	510	AvgPosterProb	0.8097430312	ExpectedScore	95.0092698252
Gaps	30	Identity	396	MaxAvgPosterProb	0.8347003083
Score	162

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

123

7.32059e-56

Align-len	233	AvgPosterProb	0.9129390921	ExpectedScore	104.3082296742
Gaps	2	Identity	197	MaxAvgPosterProb	0.9268975705
Score	123

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

123

7.32059e-56

Align-len	233	AvgPosterProb	0.9129390921	ExpectedScore	104.3082296742
Gaps	2	Identity	197	MaxAvgPosterProb	0.9268975705
Score	123

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

120

3.61655e-54

Align-len	233	AvgPosterProb	0.8891929299	ExpectedScore	100.7317417778
Gaps	2	Identity	196	MaxAvgPosterProb	0.9188856741
Score	120

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

120

3.61655e-54

Align-len	233	AvgPosterProb	0.8891929299	ExpectedScore	100.7317417778
Gaps	2	Identity	196	MaxAvgPosterProb	0.9188856741
Score	120

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

109

5.87091e-48

Align-len	232	AvgPosterProb	0.8883476219	ExpectedScore	83.1893853910
Gaps	0	Identity	191	MaxAvgPosterProb	0.9051579577
Score	109

gi|51763895|
ref|NT_095534.1|
Mm7_95171_37

Mus musculus chromosome 7 genomic contig, strain Balb/c

100

7.07866e-43

Align-len	232	AvgPosterProb	0.8739782356	ExpectedScore	69.6932437656
Gaps	0	Identity	188	MaxAvgPosterProb	0.8885765561
Score	100

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

196

4.46683e-97

Align-len	645	AvgPosterProb	0.8270137914	ExpectedScore	132.7353814998
Gaps	46	Identity	505	MaxAvgPosterProb	0.8501948279
Score	213

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

195

1.63901e-96

Align-len	667	AvgPosterProb	0.7941605906	ExpectedScore	118.8566215274
Gaps	38	Identity	517	MaxAvgPosterProb	0.8307543366
Score	211

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

154

2.30398e-73

Align-len	490	AvgPosterProb	0.8346591785	ExpectedScore	105.0315174485
Gaps	32	Identity	384	MaxAvgPosterProb	0.8492140897
Score	168

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

150

4.17647e-71

Align-len	510	AvgPosterProb	0.8097430312	ExpectedScore	95.0092698252
Gaps	30	Identity	396	MaxAvgPosterProb	0.8347003083
Score	162

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

123

7.32059e-56

Align-len	233	AvgPosterProb	0.9129390921	ExpectedScore	104.3082296742
Gaps	2	Identity	197	MaxAvgPosterProb	0.9268975705
Score	123

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

123

7.32059e-56

Align-len	233	AvgPosterProb	0.9129390921	ExpectedScore	104.3082296742
Gaps	2	Identity	197	MaxAvgPosterProb	0.9268975705
Score	123

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

120

3.61655e-54

Align-len	233	AvgPosterProb	0.8891929299	ExpectedScore	100.7317417778
Gaps	2	Identity	196	MaxAvgPosterProb	0.9188856741
Score	120

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

120

3.61655e-54

Align-len	233	AvgPosterProb	0.8891929299	ExpectedScore	100.7317417778
Gaps	2	Identity	196	MaxAvgPosterProb	0.9188856741
Score	120

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

109

5.87091e-48

Align-len	232	AvgPosterProb	0.8883476219	ExpectedScore	83.1893853910
Gaps	0	Identity	191	MaxAvgPosterProb	0.9051579577
Score	109

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

100

7.07866e-43

Align-len	232	AvgPosterProb	0.8739782356	ExpectedScore	69.6932437656
Gaps	0	Identity	188	MaxAvgPosterProb	0.8885765561
Score	100

gi|82914827|
ref|NW_001030877.1|
Mm7_11169347_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

1.496e-22

Align-len	103	AvgPosterProb	0.9419031414	ExpectedScore	56.5828723102
Gaps	0	Identity	90	MaxAvgPosterProb	0.9440151047
Score	64

gi|82953402|
ref|NW_001030542.1|
Mm14_11170700_37

Mus musculus chromosome 14 genomic contig, alternate assembly (based on Celera assembly)

189

4.00018e-93

Align-len	290	AvgPosterProb	0.9189483780	ExpectedScore	175.0507475972
Gaps	5	Identity	257	MaxAvgPosterProb	0.9390080183
Score	192

ref|NM_008220.2|
|gi|
31982299

Mus musculus hemoglobin, beta adult major chain (Hbb-b1), mRNA

115

2.40552e-51

Align-len	225	AvgPosterProb	0.9095872914	ExpectedScore	96.2855881615
Gaps	2	Identity	189	MaxAvgPosterProb	0.9241014868
Score	115

ref|NM_008220.2|
|gi|
31982299

Mus musculus hemoglobin, beta adult major chain (Hbb-b1), mRNA

115

2.40552e-51

Align-len	225	AvgPosterProb	0.9095872914	ExpectedScore	96.2855881615
Gaps	2	Identity	189	MaxAvgPosterProb	0.9241014868
Score	115

ref|NM_008220.2|
|gi|
31982299

Mus musculus hemoglobin, beta adult major chain (Hbb-b1), mRNA

8.53486e-38

Align-len	214	AvgPosterProb	0.8652462549	ExpectedScore	61.8046589195
Gaps	0	Identity	173	MaxAvgPosterProb	0.8812037513
Score	91

ref|NM_008220.2|
|gi|
31982299

Mus musculus hemoglobin, beta adult major chain (Hbb-b1), mRNA

6.84473e-30

Align-len	147	AvgPosterProb	0.8750256461	ExpectedScore	60.9343791855
Gaps	2	Identity	124	MaxAvgPosterProb	0.8871495956
Score	78

gi|31980675|
ref|NM_016956.2|

Mus musculus hemoglobin, beta adult minor chain (Hbb-b2), mRNA

115

2.40552e-51

Align-len	225	AvgPosterProb	0.8876474896	ExpectedScore	96.6210357279
Gaps	2	Identity	189	MaxAvgPosterProb	0.9183566580
Score	115

gi|31980675|
ref|NM_016956.2|

Mus musculus hemoglobin, beta adult minor chain (Hbb-b2), mRNA

115

2.40552e-51

Align-len	225	AvgPosterProb	0.8876474896	ExpectedScore	96.6210357279
Gaps	2	Identity	189	MaxAvgPosterProb	0.9183566580
Score	115

gi|31980675|
ref|NM_016956.2|

Mus musculus hemoglobin, beta adult minor chain (Hbb-b2), mRNA

113

3.23873e-50

Align-len	226	AvgPosterProb	0.8873094971	ExpectedScore	89.3110829877
Gaps	2	Identity	189	MaxAvgPosterProb	0.9133733393
Score	113

gi|31980675|
ref|NM_016956.2|

Mus musculus hemoglobin, beta adult minor chain (Hbb-b2), mRNA

103

1.43286e-44

Align-len	214	AvgPosterProb	0.8836262797	ExpectedScore	79.2205928511
Gaps	0	Identity	177	MaxAvgPosterProb	0.9018833648
Score	103

gi|31980675|
ref|NM_016956.2|

Mus musculus hemoglobin, beta adult minor chain (Hbb-b2), mRNA

1.496e-22

Align-len	125	AvgPosterProb	0.8312619344	ExpectedScore	50.9543443370
Gaps	2	Identity	105	MaxAvgPosterProb	0.8607867297
Score	65

gi|82909689|
ref|NW_001030868.1|
Mm7_11169324_37

Mus musculus chromosome 7 genomic contig, alternate assembly (based on Celera assembly)

2.01418e-21

Align-len	169	AvgPosterProb	0.8180981133	ExpectedScore	38.4467987789
Gaps	2	Identity	134	MaxAvgPosterProb	0.8449331210
Score	62

gi|149233633|
ref|NT_039169.7|
Mm1_39209_37

Mus musculus chromosome 1 genomic contig, strain C57BL/6J

1.07442e-10

Align-len	178	AvgPosterProb	0.7636697087	ExpectedScore	16.7723621659
Gaps	5	Identity	134	MaxAvgPosterProb	0.7853445199
Score	45

gi|82796158|
ref|NW_001030649.1|
Mm1_11170998_37

Mus musculus chromosome 1 genomic contig, alternate assembly (based on Celera assembly)

1.07442e-10

Align-len	178	AvgPosterProb	0.7636697087	ExpectedScore	16.7723621659
Gaps	5	Identity	134	MaxAvgPosterProb	0.7853445199
Score	45

ppALIGN• 1.0

posterior probabilities for
score based sequence alignments

ppBLAST Result

BLAST Parameters

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Parameters

[Show]

Results

ppALIGN• 1.0

posterior probabilities forscore based sequence alignments

ppBLAST Result

BLAST Parameters

[Show]

Parameters

[Show]

Results

posterior probabilities for
score based sequence alignments