AlignOverlap::AlignSegment Member List

This is the complete list of members for AlignOverlap::AlignSegment, including all inherited members.

AlignOverlap (defined in AlignOverlap::AlignSegment)	AlignOverlap::AlignSegment	[friend]
AlternativeSegment (defined in AlignOverlap::AlignSegment)	AlignOverlap::AlignSegment	[friend]
BeginAlternatives(const std::string &generator)	AlignOverlap::AlignSegment	[inline]
EndAlternatives(const std::string &generator)	AlignOverlap::AlignSegment	[inline]
GetAlign(Align &a) const	AlignOverlap::AlignSegment
n_deletions (defined in AlignOverlap::AlignSegment)	AlignOverlap::AlignSegment
n_insertions (defined in AlignOverlap::AlignSegment)	AlignOverlap::AlignSegment
n_matches	AlignOverlap::AlignSegment
overlap	AlignOverlap::AlignSegment
start_pos	AlignOverlap::AlignSegment
StreamOutQuery(std::ostream &ost)	AlignOverlap::AlignSegment
StreamOutSubject(std::ostream &ost)	AlignOverlap::AlignSegment