Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

Align
AlignEntry
AlignHandler
AlignOverlap
AlignOverlap::AlignSegment
AlignStartOverlap
Alphabet
AlignOverlap::AlternativeSegment
BoltzmannWeight
CheckpointDriver
DemoCheckpointDriver
DnaAlphabet
DnaSequence
DRand48
DriverFirstMoment
DriverLocalBound
DriverPosterDecode
DriverPosterProb
DriverSampling
DynCell< TYPE >
DynCellMoments< TYPE, N >
ExceptionBase
PartitionWorkspace::ForwardBackwardInfo
Frequencies
Align::GapsAlignedError
HmmWeight
Alphabet::InvalidCharacter
Alphabet::InvalidCharacterCode
Alphabet::MatchError
NotEnoughMemory
OptCell
Pair
Sequence::ParseError
PartitionDriverBase
PartitionWorkspace
ProteinAlphabet
ProteinScoring
ProteinSequence
PartitionWorkspace::RowInfo
ScoreMatrix
Sequence
PartitionWorkspace::Transition
vector
ViterbiWorkspace
Weight
Workspace< CELL >
xdouble