ppALIGN API documentation

AlignStartOverlap Class Reference

#include <alignoverlap.hpp>

Inheritance diagram for AlignStartOverlap:
AlignHandler

List of all members.

Public Member Functions

void Add (const std::string &generator, const Align &a)
void StreamOut (std::ostream &ost, Pair offset)

Public Attributes

std::map< std::string,
std::map< Pair, int > > 		start_points
std::map< std::string,
std::map< Pair, int > > 		end_points

Detailed Description

Alternative alignment Handler for different start and end positions of local alignments.

Definition at line 52 of file alignoverlap.hpp.

Member Function Documentation

void AlignStartOverlap::Add ( const std::string &  generator,
const Align &  a 
) [virtual]

Add an alternative alignment to the Handler.

Parameters:
generator name of the generator the alignment has been produced
a alternative alignment

Implements AlignHandler.

The documentation for this class was generated from the following file: