ppALIGN API documentation

AlignHandler Class Reference

#include <alignoverlap.hpp>

Inheritance diagram for AlignHandler:
AlignOverlap AlignStartOverlap

List of all members.

Public Member Functions

virtual void Add (const std::string &generator, const Align &a)=0

Detailed Description

An abstract class to handle alternative alignments. The classes AlignStartOverlap and AlignOverlap are derived from this class.

Definition at line 34 of file alignoverlap.hpp.

Member Function Documentation

virtual void AlignHandler::Add ( const std::string &  generator,
const Align &  a 
) [pure virtual]

Add an alternative alignment to the Handler.

Parameters:
generator name of the generator the alignment has been produced
a alternative alignment

Implemented in AlignStartOverlap, and AlignOverlap.

The documentation for this class was generated from the following file: