ppALIGN API documentation

DnaAlphabet Class Reference

#include <alphabet.hpp>

Inheritance diagram for DnaAlphabet:
Alphabet

List of all members.

Public Member Functions

virtual const char * Name () const

Detailed Description

DNA IUPAC alphabet.

code	description
A	Adenine
C	Cytosine
G	Guanine
T	Thymine
U	Uracil
R	Purine (A or G)
Y	Pyrimidine (C, T, or U)
M	C or A
K	T, U, or G
W	T, U, or A
S	C or G
B	C, T, U, or G (not A)
D	A, T, U, or G (not C)
H	A, T, U, or C (not G)
V	A, C, or G (not T, not U)
N	Any base (A, C, G, T, or U)

Definition at line 231 of file alphabet.hpp.


The documentation for this class was generated from the following file: