ppALIGN API documentation

PartitionWorkspace::ForwardBackwardInfo Struct Reference

#include <partitionworkspace.hpp>

List of all members.

Public Member Functions

double PairProb (long i, long j)

Public Attributes

long i
PartitionWorkspace::RowInfo last_row
PartitionWorkspace::RowInfo curr_row
PartitionWorkspace::RowInfo next_row
PartitionWorkspace::const_iterator last_for
PartitionWorkspace::const_iterator curr_for
PartitionWorkspace::const_iterator curr_back

Friends

class PartitionWorkspace

Detailed Description

Information of intermediate results of the forward and backward computation. Instances of this class is passed to the callback functions void PartitionDriverBase::OnForwardBackward(PartitionWorkspace::ForwardBackwardInfo & fb_info) and void PartitionDriverBase::OnMarkovChain(PartitionWorkspace::ForwardBackwardInfo & fb_info, Workspace<PartitionWorkspace::Transition> const_iterator curr_markov, const xdouble & row_z) for each row as soon as the forward and the backward quantities are available.

Examples:

pairprobmap.cpp.

Definition at line 130 of file partitionworkspace.hpp.

Member Function Documentation

double PartitionWorkspace::ForwardBackwardInfo::PairProb ( long  i,
long  j 
) [inline]

return pair probabilty. If i,j are out of the strip 0 is returned.

Parameters:
i coordinate of the first sequence (i=0 ... length1-1)
j coordinate of the second sequence (j=0 ... length2-1)
Returns:
probability that $a_i$ and $b_j$ is paired
Examples:
pairprobmap.cpp.

Definition at line 1165 of file partitionworkspace.hpp.

Member Data Documentation

PartitionWorkspace::const_iterator PartitionWorkspace::ForwardBackwardInfo::curr_back

backward probabilities of the current row

Definition at line 168 of file partitionworkspace.hpp.

PartitionWorkspace::const_iterator PartitionWorkspace::ForwardBackwardInfo::curr_for

forward probabilities of the current row

Definition at line 164 of file partitionworkspace.hpp.

PartitionWorkspace::RowInfo PartitionWorkspace::ForwardBackwardInfo::curr_row

information about the strip size of the current row (i)

Definition at line 152 of file partitionworkspace.hpp.

long PartitionWorkspace::ForwardBackwardInfo::i

index of the row (i=0 ... length1-1)

Examples:
pairprobmap.cpp.

Definition at line 145 of file partitionworkspace.hpp.

PartitionWorkspace::const_iterator PartitionWorkspace::ForwardBackwardInfo::last_for

forward probabilities of the last row

Definition at line 160 of file partitionworkspace.hpp.

PartitionWorkspace::RowInfo PartitionWorkspace::ForwardBackwardInfo::last_row

information about the strip size of the last row (i-1)

Definition at line 148 of file partitionworkspace.hpp.

PartitionWorkspace::RowInfo PartitionWorkspace::ForwardBackwardInfo::next_row

inforamtion about the strip size of the next row (i+1)

Definition at line 156 of file partitionworkspace.hpp.

The documentation for this struct was generated from the following file: