ppALIGN API documentation

AlignOverlap::AlternativeSegment Class Reference

#include <alignoverlap.hpp>

List of all members.

Public Member Functions

void StreamOutQuery (std::ostream &ost) const
void StreamOutSubject (std::ostream &ost) const

Public Attributes

Align::const_iterator begin
Align::const_iterator end
Pair begin_pos

Friends

class AlignOverlap
class AlignSegment
lexiographic order of AlternativeSegments



bool operator< (const AlternativeSegment &a, const AlternativeSegment &b)
bool operator== (const AlternativeSegment &a, const AlternativeSegment &b)

Detailed Description

Alternative Alignment segments with lexiographic ordering based on the sequence of pairs.

Definition at line 141 of file alignoverlap.hpp.

Member Data Documentation

Align::const_iterator AlignOverlap::AlternativeSegment::begin

begin and end if the segment in the alternative alignment

Definition at line 148 of file alignoverlap.hpp.

The documentation for this class was generated from the following file: