ppALIGN API documentation
DriverFirstMoment Member List
This is the complete list of members for DriverFirstMoment, including all inherited members.| AfterComputation() | DriverFirstMoment | [virtual] |
| alternative_alignments | PartitionDriverBase | |
| BeforeComputation() | DriverFirstMoment | [virtual] |
| ComputePosterior(bool doit) | PartitionDriverBase | [inline] |
| do_add_dangling (defined in PartitionDriverBase) | PartitionDriverBase | [protected] |
| do_compute_posterior (defined in PartitionDriverBase) | PartitionDriverBase | [protected] |
| driver_name | PartitionDriverBase | [protected] |
| DriverFirstMoment(const ScoreMatrix &score, int gap_open, int gap_extension) | DriverFirstMoment | |
| FirstMoment() | DriverFirstMoment | |
| ForwardDone() | PartitionDriverBase | [inline, virtual] |
| LocalDangling(bool dang) | PartitionDriverBase | [inline] |
| Name() const | PartitionDriverBase | |
| NeedBackward() | PartitionDriverBase | [inline, virtual] |
| NeedFirstBackward() | PartitionDriverBase | [inline, virtual] |
| NeedForward() | DriverFirstMoment | [inline, virtual] |
| NeedForwardBackward() | PartitionDriverBase | [inline, virtual] |
| NeedInitStrip() | PartitionDriverBase | [inline, virtual] |
| NeedMarkovChain() | PartitionDriverBase | [inline, virtual] |
| OnBackward(long i, const PartitionWorkspace::RowInfo &last_row, const PartitionWorkspace::RowInfo &curr_row, const PartitionWorkspace::const_iterator last, const PartitionWorkspace::const_iterator curr) | PartitionDriverBase | [inline, virtual] |
| OnForward(long i, const PartitionWorkspace::RowInfo &last_row, const PartitionWorkspace::RowInfo &curr_row, const PartitionWorkspace::const_iterator last, const PartitionWorkspace::const_iterator curr) | DriverFirstMoment | [virtual] |
| OnForwardBackward(PartitionWorkspace::ForwardBackwardInfo &fb_info) | PartitionDriverBase | [inline, virtual] |
| OnMarkovChain(PartitionWorkspace::ForwardBackwardInfo &fb_info, Workspace< PartitionWorkspace::Transition >::const_iterator curr_markov, const xdouble &row_z) | PartitionDriverBase | [inline, virtual] |
| PartitionDriverBase() | PartitionDriverBase | |
| PartitionWorkspace (defined in PartitionDriverBase) | PartitionDriverBase | [friend] |
| Program (defined in PartitionDriverBase) | PartitionDriverBase | [friend] |
| ProvideAlternativePosteriorProb() | PartitionDriverBase | [inline, virtual] |
| SetWorkspace(PartitionWorkspace *ws) | PartitionDriverBase | [protected, virtual] |
| ws | PartitionDriverBase | [protected] |
| ~PartitionDriverBase() | PartitionDriverBase | [inline, virtual] |