ppALIGN API documentation
Frequencies Member List
This is the complete list of members for Frequencies, including all inherited members.| Count(const Sequence &seq) (defined in Frequencies) | Frequencies | |
| Frequencies(const Alphabet &a) (defined in Frequencies) | Frequencies | |
| GetCumWeight(size_t i) const (defined in Frequencies) | Frequencies | [inline] |
| GetLogWeight(size_t i) const (defined in Frequencies) | Frequencies | [inline] |
| GetNormWeight(size_t i) const (defined in Frequencies) | Frequencies | [inline] |
| Normalize(bool setupUIPAC=false) | Frequencies | |
| operator[](unsigned long i) (defined in Frequencies) | Frequencies | [inline] |
| operator[](unsigned long i) const (defined in Frequencies) | Frequencies | [inline] |
| operator[](unsigned int i) (defined in Frequencies) | Frequencies | [inline] |
| operator[](unsigned int i) const (defined in Frequencies) | Frequencies | [inline] |
| operator[](int i) (defined in Frequencies) | Frequencies | [inline] |
| operator[](int i) const (defined in Frequencies) | Frequencies | [inline] |
| operator[](char ch) (defined in Frequencies) | Frequencies | [inline] |
| operator[](char ch) const (defined in Frequencies) | Frequencies | [inline] |
| RandomLetter(DRand48 &rng) const | Frequencies | |
| RandomSequence(DRand48 &rng, const Sequence::iterator &begin, const Sequence::iterator &end) const (defined in Frequencies) | Frequencies | |
| RandomSequence(DRand48 &rng, Sequence &seq, size_t length) const | Frequencies | |
| RandomSequence(DRand48 &rng, Sequence &seq) const | Frequencies | [inline] |
| Reset() (defined in Frequencies) | Frequencies |