ppALIGN API documentation

Frequencies Member List

This is the complete list of members for Frequencies, including all inherited members.
Count(const Sequence &seq) (defined in Frequencies)Frequencies
Frequencies(const Alphabet &a) (defined in Frequencies)Frequencies
GetCumWeight(size_t i) const (defined in Frequencies)Frequencies [inline]
GetLogWeight(size_t i) const (defined in Frequencies)Frequencies [inline]
GetNormWeight(size_t i) const (defined in Frequencies)Frequencies [inline]
Normalize(bool setupUIPAC=false)Frequencies
operator[](unsigned long i) (defined in Frequencies)Frequencies [inline]
operator[](unsigned long i) const (defined in Frequencies)Frequencies [inline]
operator[](unsigned int i) (defined in Frequencies)Frequencies [inline]
operator[](unsigned int i) const (defined in Frequencies)Frequencies [inline]
operator[](int i) (defined in Frequencies)Frequencies [inline]
operator[](int i) const (defined in Frequencies)Frequencies [inline]
operator[](char ch) (defined in Frequencies)Frequencies [inline]
operator[](char ch) const (defined in Frequencies)Frequencies [inline]
RandomLetter(DRand48 &rng) const Frequencies
RandomSequence(DRand48 &rng, const Sequence::iterator &begin, const Sequence::iterator &end) const (defined in Frequencies)Frequencies
RandomSequence(DRand48 &rng, Sequence &seq, size_t length) const Frequencies
RandomSequence(DRand48 &rng, Sequence &seq) const Frequencies [inline]
Reset() (defined in Frequencies)Frequencies