Weight Member List

This is the complete list of members for Weight, including all inherited members.

align_type	Weight
allow_DI	Weight
allow_ID	Weight
AverageUIPAC() (defined in Weight)	Weight	[protected]
freq1	Weight
freq2	Weight
gap_extension	Weight
gap_open	Weight
GetAlphabet1() const	Weight	[inline]
GetAlphabet2() const	Weight	[inline]
IsBoltzmann() const	Weight	[inline, virtual]
Normalize(bool setupUIPAC=false)	Weight	[protected]
scale	Weight
StreamOut(std::ostream &ost)	Weight	[virtual]
tDD (defined in Weight)	Weight
tDE (defined in Weight)	Weight
tDI (defined in Weight)	Weight
tDM (defined in Weight)	Weight
tID (defined in Weight)	Weight
tIE (defined in Weight)	Weight
tII (defined in Weight)	Weight
tIM (defined in Weight)	Weight
tMD (defined in Weight)	Weight
tME (defined in Weight)	Weight
tMI (defined in Weight)	Weight
tMM (defined in Weight)	Weight
tSD (defined in Weight)	Weight
tSI (defined in Weight)	Weight
tSM (defined in Weight)	Weight
Weight(const Alphabet &a1, const Alphabet &a2, AlignmentType t, bool _allow_DI=true, bool _allow_ID=false)	Weight
~Weight()	Weight	[inline, virtual]