AlignOverlap Member List

This is the complete list of members for AlignOverlap, including all inherited members.

Add(const std::string &generator, const Align &a)	AlignOverlap	[virtual]
AlignOverlap(const Align &ref, Sequence &_seq1, Sequence &_seq2)	AlignOverlap
alternative_const_iterator typedef	AlignOverlap
alternative_iterator typedef	AlignOverlap
BeginSegments()	AlignOverlap	[inline]
BuildOverlapSegments() (defined in AlignOverlap)	AlignOverlap
EndSegments()	AlignOverlap	[inline]
segment_const_iterator typedef	AlignOverlap
segment_iterator typedef	AlignOverlap
StreamOutPartition(std::ostream &ost, Pair seq_offset=Pair(0, 0))	AlignOverlap
~AlignHandler() (defined in AlignHandler)	AlignHandler	[inline, virtual]