ViterbiWorkspace Member List

This is the complete list of members for ViterbiWorkspace, including all inherited members.

cell_t typedef	Workspace< OptCell >
Cols()	Workspace< OptCell >	[inline]
const_iterator typedef	Workspace< OptCell >
const_reverse_iterator typedef	Workspace< OptCell >
ForwardDone()	CheckpointDriver	[inline, private, virtual]
iterator typedef	Workspace< OptCell >
OptimalAlignment(const Sequence &seq1, const Sequence &seq2, const ScoreMatrix &mat, AlignmentType atype, int gap_open, int gap_extension, bool _allow_DI, bool _allow_ID, Align &a, bool _dangling=true)	ViterbiWorkspace
OptimalScore(const Sequence &seq1, const Sequence &seq2, const ScoreMatrix &mat, AlignmentType atype, int gap_open, int gap_extension, bool _allow_DI, bool _allow_ID) (defined in ViterbiWorkspace)	ViterbiWorkspace
parent_t typedef	Workspace< OptCell >
reverse_iterator typedef	Workspace< OptCell >
RowBegin(size_t row)	Workspace< OptCell >	[inline]
Rows()	Workspace< OptCell >	[inline]
SetupTable(size_t n_rows, size_t n_cols)	Workspace< OptCell >
StartBackward()	CheckpointDriver	[private, virtual]
ViterbiWorkspace(size_t n)	ViterbiWorkspace
Workspace(size_t n_cells)	Workspace< OptCell >
~CheckpointDriver()	CheckpointDriver	[inline, private, virtual]