ProteinScoring Member List

This is the complete list of members for ProteinScoring, including all inherited members.

GetAlphabet1() const	ScoreMatrix	[inline]
GetAlphabet2() const	ScoreMatrix	[inline]
GetScale(const std::string &name)	ProteinScoring	[inline, static]
ScoreMatrix::GetScale(const Alphabet &a1, const Alphabet &a2, const std::string name)	ScoreMatrix	[static]
ScoreMatrix::GetScale(const Frequencies &freq1, const Frequencies &freq2) const	ScoreMatrix
ScoreMatrix::GetScale(const Sequence &seq1, const Sequence &seq2) const	ScoreMatrix
ProteinScoring(const std::string &name)	ProteinScoring
ScoreMatrix(const Alphabet &a1, const Alphabet &a2)	ScoreMatrix	[inline]
ScoreMatrix(const Alphabet &a1, const Alphabet &a2, int match, int mismatch)	ScoreMatrix	[inline]
ScoreMatrix(const Alphabet &a1, const Alphabet &a2, const std::string &name)	ScoreMatrix