ppALIGN API documentation
- s -
- Score() : Align
- ScoreMatrix() : ScoreMatrix
- seed() : DRand48
- Seq1Begin() : PartitionWorkspace
- Seq2Begin() : PartitionWorkspace
- SeqEnd() : Align
- SeqOffset() : Align
- Sequence() : Sequence
- SetAlign() : DriverPosterProb
- SetMaxSize() : DriverPosterDecode
- SetNumber() : DriverSampling
- SetStart() : DriverLocalBound
- SetStartPos() : Align
- SetupTable() : Workspace< CELL >
- SetWorkspace() : PartitionDriverBase
- Size() : Alphabet
- SpaceAvail() : CheckpointDriver , DemoCheckpointDriver
- SpaceRequired() : CheckpointDriver , DemoCheckpointDriver
- StartBackward() : DemoCheckpointDriver , CheckpointDriver
- StreamOut() : Weight
- StreamOutPartition() : AlignOverlap
- StreamOutQuery() : AlignOverlap::AlignSegment
- StreamOutSubject() : AlignOverlap::AlignSegment